I came back from lunch to find a large, spiral-bound book on my laptop. I picked it up. It was Aquatic Insects of North America, Second Edition, by R.W. Merritt and K.W. Cummins. My supervisor and I had had a brief conversation about stream monitoring that morning, and so I suspected this was related.
Continue reading Accordion CrimesStar Throwing
These past few weeks at Dane County Humane Society’s Wildlife Center I have continued my training rotation with the songbirds. As of June 6, the center had 93 native songbirds in its care! Working in this area, I began to see how vital the volunteers are to keeping the center running. With only 6 paid staff, there is absolutely no way the center could exist with out the dedication and hard work of the hundreds of volunteers that come in each and every week to help. Some of these wildlife heroes have been volunteering at the center for a decade! They are also such caring, kind people who do what they do for the love of the animals who need their help. Songbirds are a particularly complicated group of wildlife to care for. Baby birds housed in makeshift nests (knitted by yet more dedicated volunteers) in incubators require hand feeding every half hour from morning to night. Like human babies, they also poop a lot and need their nests changed often. When the hatchlings grow in their feathers and begin hopping around the incubator, they are moved to indoor cages or outdoor enclosures. These fledglings are fed every hour. When the fledglings grow in all their flight feathers they are moved to larger outdoor enclosures with other adult birds until they are ready to be released. As you can imagine, care for all these birds requires the teamwork of lots of volunteers, interns, and staff! As a songbird intern I have also been given a leadership role in that I “oversee” the shift and make sure all the birds are getting proper care and the volunteers have everything they need. I am grateful for the opportunity to practice being a leader!
Burned areas detection using GEE and Landsat on a regional scale
I have been working on my summer project for about 2.5 weeks now. I will continue to work remotely until I head to Panama next week to be in the field for a month. So far I have focused on two separate project, one is fire detection in the Azuero region (more specifically the Los Santos province) using satellite images and another is to set up an ESRI app for volunteers to be able to collect plant information in the field in a convenient manner.
The Azuero Earth Project wants to understand why locals burn in the region, the temporal and spatial distributions of the burns, if there are any patterns (for example clustering or proximity to certain features) that can be identified, in order to better plan their reforestation parcels.
The Global Forest Watch platform provides real-time fire data based on the FIRMS dataset created by NASA using MODIS and VIIRS data on a global scale. However, the spatial resolution is very coarse, 1km for the MODIS dataset and 375m for the VIIRS dataset, so using data from higher spatial resolution sources would be beneficial to provide a more accurate picture of fire occurrences on a more regional scale.
It is my first time doing remote sensing work related to fires, so first I started going over literature to explore what are some data and methods that are commonly used for this purpose, and what specifically I should be detecting.
The burns occur during dry season, so from December to May each year in the peninsula. Since next week I will be going to Panama to conduct social surveys with locals to understand their experience related to fires for this past season, I’ve decided to limit the timeline for fire detection to the period from December 2018 – May 2019.
Due to our need of higher spatial resolution images, I thought either Landsat OLI / ETM+ or Planet images would be good options. Planet images are very high spatial resolution at about 3-5 meters, while Landsat images are at 30 meter resolution. After acquiring some data, I realized that I do not have enough quota on my account to get Planet images (even if I get the monthly mosaic) over 6 months. Moreover, the spectral resolution of planet images is more limited as they come in RGB + near-infrared (NIR) bands. For fire detection it is often better to use other bands such as the short-wave infrared (SWIR) or thermal bands depending on what specifically you are detecting (see below). Thought I have decided to go with Landsat imagery, which has a lot more bands (11 in Landsat OLI, including SWIR and thermal bands) and which is freely available from USGS. A good alternative source for acquiring Landsat data is Google Earth Engine. I have decided to go with the latter and I acquired cloud-masked monthly mosaics for the Los Santos province and exported the images to my Google Drive so I would be able to process them locally using ENVI.


There are four types of spectral signals observed from space: direct radiation from the flame front (heat & light), aerosols (smoke), solid residue (char & ash) and altered vegetation structure (scar). The thermal signal of active fires is quite specific, however the biggest limitation of detecting active fires is their short-lived nature. The spectral signal resulting from surface darkening due to charcoal deposition is quite a specific consequence of vegetation burning. However, it is relatively short-lived. It is attenuated by wind scattering, or washed out by rain, in a period of a few days to a few weeks to some months after the fire. The signal for scarred areas is less specific since partial or total vegetation removal may result from harvesting, grazing, windthrow, or defoliation by pathogenic agents. However, the vegetation scar signal is more persistent, lasting from a few weeks in tropical savannas, to several years in boreal forests. I have decided to detect burned areas since I was able to get data every two weeks to a month due to cloud cover in the region.
To detect burned area we can use the Normalized Burn Ratio (NBR). The NBR was defined to highlight areas that have burned and to index the severity of a burn using Landsat imagery. The formula for the NBR is very similar to that of NDVI except that it uses the NIR band and the SWIR band. The NIR and SWIR parts of the electromagnetic spectrum are a powerful combination of bands to use for this index given vegetation reflects strongly in the NIR region of the electromagnetic spectrum and weakly in the SWIR. Alternatively, it has been shown that a fire scar which contains scarred woody vegetation and earth will reflect more strongly in the SWIR part of the electromagnetic spectrum and beyond.

An alternative I could map burned areas using supervised classification, using algorithms such as Artificial Neural Network (ANN) and Spectral Angle Mapper (SAM). So far I have acquired NBR images for monthly mosaics of Los Santos using Google Earth Engine, and will use ENVI to explore the potential of using supervised classification for burned area detection instead of NBR.
Finally, a secondary project for which I have created an app for over the past couple weeks is a project involving plants related to local artisans. Although the Azuero peninsula of Panama was once largely tropical dry forest, it is now has less than 7% forest cover. The extreme pressure on natural ecosystems has affected the very tree and plant resources that sustain local artisans and their wellbeing. The AEP aims to revive and innovate upon existing artisanal traditions in the Azuero region while reaffirming the connection between artisan crafts and the natural environment through the formation of a local Eco-Artisans association, organization of workshops for artisan groups throughout the region, connection of local groups to key sale venues; and incorporating conservation of underlying natural resources into the fabric of Artisan group identity. I have created a plant collection app using ArcGIS Desktop, ArcGIS Online and GeoForms so researchers working on the plants project as well as peace corps volunteers would be able to collect plant data easily in the field.
I look forward to going to Pedasi next week to work with a group of motivated people on different projects and be live a new environment for a month!
urban tree assessment: one month reflection
It’s been a little over a month since the start of this project, and now’s a good time more than any to touch base and see if I’m still on course for this project’s goal. In summary, my project is to implement LiDAR into the Wisconsin Urban Forest Assessment program and measure for changes in accuracy for urban forest assessments. This month has been extremely informative and progressive as I build my knowledge and research robust methods, but my angst builds as I look forward towards developing my deliverable and tool.
Continue reading urban tree assessment: one month reflectioninto the unknown
It’s the second week of June and school is out! It is also a busy time along the Ice Age Trail…
The past three weeks have been full of “last week of school” outings, as well as Saunters programs in the first week of summer. While Waukesha, Lodi, and Sauk Prairie schools were all involved in their own Saunters programs this past week, I spent the whole week sauntering with the students and teachers of Sauk Prairie.
READ MOREThe true amazon
I always had a very romantic idea about the Amazon. The Amazon for me was an untouched nature with an immense forest and huge trees. Very much the classic thought of wilderness of Cronon (1995) that we have discussed during our course. Last week, I had a unique chance to experience the center of the Amazon rainforest in Para state for one week. CI organized an internal workshop to strengthen efforts to promote the Amazon restoration program. Is there better motivation to restore the Amazon other than experiencing the rainforest yourself? This workshop was a great opportunity to understand the magnitude of the program being proposed, to know CI members from all over, and to feel how it is to live in the Amazon.
Continue reading The true amazonDiving in … and striving for sustainability

Honestly … there are A LOT of moving pieces with my placement currently. Last week there was a four day long Y2Y board meeting that jump started my placement and gave it a full-on power boost!
Continue reading Diving in … and striving for sustainabilityEverything can be done tomorrow
So, in the spirit of cultural immersion and a nod to the title, I started this post yesterday and decided to complete it tomorrow (or today rather). When in…Iceland, right?
I left off in my first post pre-placement, hesitant but with great anticipation of what was to come. I’d be hard pressed to say that both the hesitation and anticipation weren’t both warranted and underrepresented. I made it to the island (thank you mother nature) and I am now two weeks into my placement. When I get asked how it’s going my response is, “Definitively a learning experience”.

Klettsvik Bay Beluga Sanctuary 
Aquarium & Puffin Rescue Center (first floor only)
fieldwork and mapping
As mentioned in my introductory blog post, I am mapping land use and linear intrusions of the Nethravathi river basin in India. There are no reliable land use maps of the region and hence the map I create will serve as a baseline my geospatial analysis of quantifying forest loss with each intrusion, and fragmentation analysis. The major challenge I had was to distinguish forests from agricultural plantations of rubber, areca, and coffee. This distinction is important so that I don’t overestimate or underestimate the forest loss due to intrusions.
Continue reading fieldwork and mappingOne down, seven to go
It has been now over three weeks since I started the summer leadership placement at the Evaluation Unit of the UW- Extension Natural Resources Institute (NRI) and I must say, it has not been easy. As I mentioned in my first blog, I was overwhelmed by the amount of information I needed to process to accomplish my original goal of developing logic models for each of the Natural Resources Institute’s environmental programs, including an integrated logic model for the Institute. I spent a lot of time thinking how to begin, I made at least three different frameworks to organize data so it could be easier for me to integrate them into a final model. None of them was making sense and I was not feeling very optimist. I took a deep breath (or maybe five) and decided to stop thinking about the final result and just going step by step. I met with my host supervisor and he agreed that I should focus on the “land and water” program area of the NRI, and set aside other programs, centers and reserves. The “land and water” program area includes seven NRI branded programs: the Aquatic Invasive Species Program, the Water Action Volunteers Program, the North Central Region Water Network, the Regional Natural Resources Education Program, the Conservation Professional Training Program, the Wehr Nature Center Outreach Program and the Wisconsin Master Naturalist Program.
Continue reading One down, seven to go